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LGC Genomics GmbH mothur software package
Mothur Software Package, supplied by LGC Genomics GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/mothur+software+package/mothur+software+package/pm36587901-86-1-15
Average 90 stars, based on 1 article reviews
mothur software package - by Bioz Stars, 2026-09
90/100 stars

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Related Articles

Amplification:

Article Title: Modification of wheat bran particle size and tissue composition affects colonisation and metabolism by human faecal microbiota.
Article Snippet: The V3–V4 region of the 16S rRNA gene was amplified by PCR using primers derived from Klindworth et al. (2013), with a slight modification to the reverse primer by introducing another degenerated position (K) to make it more universal.53 The library preparation was performed by means of adaptor ligation using the Ovation Rapid DR Multiplex System 1-96 (NuGEN Technologies, Inc., San Carlos, CA, US), as described by De Paepe et al. (2017).42 The sequence data has been submitted to the NCBI (National Center for Biotechnology Information) database under accession number SRP091975. .. Bioinformatics analysis of Illumina next generation 16S rRNA gene amplicon sequencing data The mothur software package (v.1.39.5) and guidelines were used to process the amplicon data generated by LGC Genomics.54 In a first step, forward and reverse reads were assembled into contigs by means of a heuristic approach based on the Phred quality scores. ..

Article Title: Mucin degradation niche as a driver of microbiome composition and Akkermansia muciniphila abundance in a dynamic gut model is donor independent.
Article Snippet: The sequencing data has been submitted to the NCBI (National Center for Biotechnology Information) database under accession code SRP126579. .. The mothur software package (v.1.39.5) and guidelines were used to process the amplicon data generated by LGC Genomics and taxonomy assignment was obtained according to the RDP version 14 and silva.nr v119 database, as described in detail by De Paepe et al. (2017). ..

Sequencing:

Article Title: Modification of wheat bran particle size and tissue composition affects colonisation and metabolism by human faecal microbiota.
Article Snippet: The V3–V4 region of the 16S rRNA gene was amplified by PCR using primers derived from Klindworth et al. (2013), with a slight modification to the reverse primer by introducing another degenerated position (K) to make it more universal.53 The library preparation was performed by means of adaptor ligation using the Ovation Rapid DR Multiplex System 1-96 (NuGEN Technologies, Inc., San Carlos, CA, US), as described by De Paepe et al. (2017).42 The sequence data has been submitted to the NCBI (National Center for Biotechnology Information) database under accession number SRP091975. .. Bioinformatics analysis of Illumina next generation 16S rRNA gene amplicon sequencing data The mothur software package (v.1.39.5) and guidelines were used to process the amplicon data generated by LGC Genomics.54 In a first step, forward and reverse reads were assembled into contigs by means of a heuristic approach based on the Phred quality scores. ..

Article Title: Studying the pre-implantation uterine microbiota in cattle using transabdominal laparoscopic low-volume lavage: Aiming for zero-contamination.
Article Snippet: Recent studies have suggested that bacteria associated with the female reproductive tract – the uterine microbiota – may be important for reproductive health and pregnancy success.. Therefore, uterine microbiome research gained much interest in the last few years.. However, it is challenging to study late postpartum uterine samples, since they hold a low microbial biomass.

Software:

Article Title: Modification of wheat bran particle size and tissue composition affects colonisation and metabolism by human faecal microbiota.
Article Snippet: The V3–V4 region of the 16S rRNA gene was amplified by PCR using primers derived from Klindworth et al. (2013), with a slight modification to the reverse primer by introducing another degenerated position (K) to make it more universal.53 The library preparation was performed by means of adaptor ligation using the Ovation Rapid DR Multiplex System 1-96 (NuGEN Technologies, Inc., San Carlos, CA, US), as described by De Paepe et al. (2017).42 The sequence data has been submitted to the NCBI (National Center for Biotechnology Information) database under accession number SRP091975. .. Bioinformatics analysis of Illumina next generation 16S rRNA gene amplicon sequencing data The mothur software package (v.1.39.5) and guidelines were used to process the amplicon data generated by LGC Genomics.54 In a first step, forward and reverse reads were assembled into contigs by means of a heuristic approach based on the Phred quality scores. ..

Article Title: Studying the pre-implantation uterine microbiota in cattle using transabdominal laparoscopic low-volume lavage: Aiming for zero-contamination.
Article Snippet: Recent studies have suggested that bacteria associated with the female reproductive tract – the uterine microbiota – may be important for reproductive health and pregnancy success.. Therefore, uterine microbiome research gained much interest in the last few years.. However, it is challenging to study late postpartum uterine samples, since they hold a low microbial biomass.

Article Title: Mucin degradation niche as a driver of microbiome composition and Akkermansia muciniphila abundance in a dynamic gut model is donor independent.
Article Snippet: The sequencing data has been submitted to the NCBI (National Center for Biotechnology Information) database under accession code SRP126579. .. The mothur software package (v.1.39.5) and guidelines were used to process the amplicon data generated by LGC Genomics and taxonomy assignment was obtained according to the RDP version 14 and silva.nr v119 database, as described in detail by De Paepe et al. (2017). ..

Generated:

Article Title: Modification of wheat bran particle size and tissue composition affects colonisation and metabolism by human faecal microbiota.
Article Snippet: The V3–V4 region of the 16S rRNA gene was amplified by PCR using primers derived from Klindworth et al. (2013), with a slight modification to the reverse primer by introducing another degenerated position (K) to make it more universal.53 The library preparation was performed by means of adaptor ligation using the Ovation Rapid DR Multiplex System 1-96 (NuGEN Technologies, Inc., San Carlos, CA, US), as described by De Paepe et al. (2017).42 The sequence data has been submitted to the NCBI (National Center for Biotechnology Information) database under accession number SRP091975. .. Bioinformatics analysis of Illumina next generation 16S rRNA gene amplicon sequencing data The mothur software package (v.1.39.5) and guidelines were used to process the amplicon data generated by LGC Genomics.54 In a first step, forward and reverse reads were assembled into contigs by means of a heuristic approach based on the Phred quality scores. ..

Article Title: Studying the pre-implantation uterine microbiota in cattle using transabdominal laparoscopic low-volume lavage: Aiming for zero-contamination.
Article Snippet: Recent studies have suggested that bacteria associated with the female reproductive tract – the uterine microbiota – may be important for reproductive health and pregnancy success.. Therefore, uterine microbiome research gained much interest in the last few years.. However, it is challenging to study late postpartum uterine samples, since they hold a low microbial biomass.

Article Title: Mucin degradation niche as a driver of microbiome composition and Akkermansia muciniphila abundance in a dynamic gut model is donor independent.
Article Snippet: The sequencing data has been submitted to the NCBI (National Center for Biotechnology Information) database under accession code SRP126579. .. The mothur software package (v.1.39.5) and guidelines were used to process the amplicon data generated by LGC Genomics and taxonomy assignment was obtained according to the RDP version 14 and silva.nr v119 database, as described in detail by De Paepe et al. (2017). ..



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